internlm/SWE-Fixer-Retriever-7B
Text Generation β’ 8B β’ Updated β’ 13 β’ β’ 2
repo stringclasses 856
values | pull_number int64 3 127k | instance_id stringlengths 12 58 | issue_numbers sequencelengths 1 5 | base_commit stringlengths 40 40 | patch stringlengths 67 1.54M | test_patch stringlengths 0 107M | problem_statement stringlengths 3 307k | hints_text stringlengths 0 908k | created_at timestamp[us] |
|---|---|---|---|---|---|---|---|---|---|
conda/conda | 620 | conda__conda-620 | [
"599"
] | c453be49e865297bf12858548a6b3e7891a8cb43 | diff --git a/conda/resolve.py b/conda/resolve.py
--- a/conda/resolve.py
+++ b/conda/resolve.py
@@ -30,6 +30,11 @@ def normalized_version(version):
return version
+class NoPackagesFound(RuntimeError):
+ def __init__(self, msg, pkg):
+ super(NoPackagesFound, self).__init__(msg)
+ self.pkg = ... | diff --git a/tests/test_resolve.py b/tests/test_resolve.py
--- a/tests/test_resolve.py
+++ b/tests/test_resolve.py
@@ -3,13 +3,15 @@
import unittest
from os.path import dirname, join
-from conda.resolve import ver_eval, VersionSpec, MatchSpec, Package, Resolve
+from conda.resolve import ver_eval, VersionSpec, Match... | Don't bail when a dependency can't be found
When a dependency for a package can't be found, conda bails completely, but this can happen e.g., just for some old builds of something. So we should just exclude any package like this from the solver.
| It can also happen if someone has a package on their binstar but not all the dependencies for it.
| 2014-03-24T18:23:13 |
conda/conda | 662 | conda__conda-662 | [
"464"
] | 3d4118668fca738984cce13d9235e0fc11a79df4 | diff --git a/conda/cli/main_remove.py b/conda/cli/main_remove.py
--- a/conda/cli/main_remove.py
+++ b/conda/cli/main_remove.py
@@ -63,6 +63,7 @@ def execute(args, parser):
from conda.api import get_index
from conda.cli import pscheck
from conda.install import rm_rf, linked
+ from conda import config
... | diff --git a/tests/helpers.py b/tests/helpers.py
--- a/tests/helpers.py
+++ b/tests/helpers.py
@@ -5,6 +5,8 @@
import sys
import os
+from contextlib import contextmanager
+
def raises(exception, func, string=None):
try:
a = func()
@@ -35,3 +37,31 @@ def run_conda_command(*args):
stdout, stderr =... | Make the conda install table easier to read
The table of what packages will be installed and removed is hard to read. For one thing, it's hard to tell easily what packages are not removed but just upgraded or downgraded. Also, the "link" terminology is confusing.
A suggestion by @jklowden:
```
$ conda update conda ... | 2014-04-11T20:19:51 | |
conda/conda | 667 | conda__conda-667 | [
"666"
] | f2934aea3f32ac94907b742a800d82c1e08757fe | diff --git a/conda/resolve.py b/conda/resolve.py
--- a/conda/resolve.py
+++ b/conda/resolve.py
@@ -278,12 +278,25 @@ def all_deps(self, root_fn, max_only=False):
def add_dependents(fn1, max_only=False):
for ms in self.ms_depends(fn1):
+ found = False
+ notfound = []... | diff --git a/tests/test_resolve.py b/tests/test_resolve.py
--- a/tests/test_resolve.py
+++ b/tests/test_resolve.py
@@ -696,6 +696,22 @@ def test_nonexistent_deps():
'requires': ['nose 1.2.1', 'python 3.3'],
'version': '1.1',
}
+ index2['anotherpackage-1.0-py33_0.tar.bz2'] = {
+ 'build':... | NoPackagesFound does not work correctly for missing recursive dependencies
| 2014-04-14T22:05:18 | |
conda/conda | 682 | conda__conda-682 | [
"400"
] | 102471a0fe64749a94ea0c1c9ddc45d17fd4f2d4 | diff --git a/conda/connection.py b/conda/connection.py
--- a/conda/connection.py
+++ b/conda/connection.py
@@ -7,106 +7,368 @@
from __future__ import print_function, division, absolute_import
from logging import getLogger
+import re
+import mimetypes
+import os
+import email
+import base64
+import ftplib
+import cg... | TLS does not appear to be verified
As far as I can tell conda is just using urllib2 which doesn't verify SSL at all in Python 2.x and in Python 3.x it doesn't do it by default. This means that even recipes which use a https link without a md5 hash there is a simple MITM code execution attack.
<!---
@huboard:{"order":1... | How can we fix it? Do we need to add several more dependencies to conda?
How can it be enabled in Python 3? And why doesn't it do it by default?
So there are a few options here, the lowest impact but easiest to get wrong is to backport the ssl stuff from Python 3 into Python 2 and include your own root certificates. ... | 2014-04-23T22:43:45 | |
conda/conda | 707 | conda__conda-707 | [
"670"
] | ad6c5ffe86bb2eac4add2c4be7b8987f0f14c453 | diff --git a/conda/lock.py b/conda/lock.py
--- a/conda/lock.py
+++ b/conda/lock.py
@@ -19,7 +19,7 @@
import os
from os.path import join
import glob
-
+from time import sleep
LOCKFN = '.conda_lock'
@@ -36,15 +36,28 @@ def __init__(self, path):
self.remove = True
def __enter__(self):
- file... | Add ability to keep retrying with a lock error
The yum installer (IIRC) has a nice feature that it will keep trying every 10 seconds or so if there is a lock error. This could be useful for conda.
| 2014-05-02T16:20:55 | ||
conda/conda | 739 | conda__conda-739 | [
"731"
] | 27441fe05630c37e7225f275ee041411f995aae5 | diff --git a/conda/config.py b/conda/config.py
--- a/conda/config.py
+++ b/conda/config.py
@@ -244,7 +244,10 @@ def get_allowed_channels():
def get_proxy_servers():
res = rc.get('proxy_servers')
- if res is None or isinstance(res, dict):
+ if res is None:
+ import requests
+ return requests.... | conda does not prompt for proxy username and password
```
[ COMPLETE ] |#################################################| 100%
The batch file cannot be found.
C:\Code>conda update conda
Fetching package metadata: .Error: HTTPError: 407 Client Error: Proxy Authentication Required: http://repo.continuum.io/p... | Do you have proxy settings set in your `.condarc` or using the `HTTP_PROXY` environment variable?
no. I used to have HTTP_PROXY set but it was automatically removed by a company pushed OS update. To avoid reliance on it I enter the proxy id and pw at the prompt.
OK. I guess the new requests code regressed in that it... | 2014-05-23T15:50:51 | |
conda/conda | 804 | conda__conda-804 | [
"802"
] | 037a783f85eb5edaf5ea59bdb5e456bed92587b3 | diff --git a/conda/cli/install.py b/conda/cli/install.py
--- a/conda/cli/install.py
+++ b/conda/cli/install.py
@@ -143,10 +143,10 @@ def install(args, parser, command='install'):
common.ensure_override_channels_requires_channel(args)
channel_urls = args.channel or ()
+ specs = []
if args.file:
- ... | `conda create --file deps.txt pkg1 pkg2 ... pkgn` doesn't work
```
$ echo "scipy" > deps.txt
$ conda create -n test08 --file deps.txt sympy
Fetching package metadata: ..
Solving package specifications: .
Package plan for installation in environment /home/mateusz/py/envs/test08:
The following packages will be linked:
... | 2014-07-10T14:40:10 | ||
conda/conda | 834 | conda__conda-834 | [
"803",
"803"
] | 997b70c012fc5be64cc9df8cdabfd860a12c8230 | diff --git a/conda/cli/main_run.py b/conda/cli/main_run.py
--- a/conda/cli/main_run.py
+++ b/conda/cli/main_run.py
@@ -7,6 +7,7 @@
from __future__ import print_function, division, absolute_import
import sys
+import logging
from conda.cli import common
@@ -17,6 +18,7 @@ def configure_parser(sub_parsers):
... | conda command-line tool provides a convenience command to run the Python executable from a specified conda environment
I often want to run the Python interpreter from a specific conda environment while knowing only the name of that environment. I know that `conda -e` gives the path to each conda environment, from which... | Maybe the new conda run command could be used to do this.
Maybe the new conda run command could be used to do this.
| 2014-07-28T20:50:17 | |
conda/conda | 909 | conda__conda-909 | [
"907"
] | e082781cad83e0bc6a41a2870b605f4ee08bbd4d | diff --git a/conda/install.py b/conda/install.py
--- a/conda/install.py
+++ b/conda/install.py
@@ -155,11 +155,20 @@ def rm_rf(path, max_retries=5):
shutil.rmtree(path)
return
except OSError as e:
- log.debug("Unable to delete %s (%s): retrying after %s "
- ... | Use rmtree workaround for write-protected files on Windows
See https://stackoverflow.com/questions/1889597/deleting-directory-in-python/1889686#1889686. Alternately we can use rd /s.
| 2014-09-11T17:31:02 | ||
conda/conda | 1,138 | conda__conda-1138 | [
"897"
] | 7305bf1990c6f6d47fc7f6f7b3f7844ec1948388 | diff --git a/conda/cli/install.py b/conda/cli/install.py
--- a/conda/cli/install.py
+++ b/conda/cli/install.py
@@ -191,13 +191,13 @@ def install(args, parser, command='install'):
"prefix %s" % prefix)
for pkg in linked:
name, ver, build = pkg.rsplit('-', 2)
- if name in... | Only try updating outdated packages with update --all
conda update --all tends to fail a lot because it requires that the whole environment become satisfiable, and without downgrading any packages. Perhaps a better solution would be to only try installing those packages that are known to be outdated.
Another idea wou... | 2015-02-09T21:39:08 | ||
conda/conda | 1,231 | conda__conda-1231 | [
"1230"
] | 50000e443ff4d60904faf59c1ea04cf269ec42c3 | diff --git a/conda/cli/main_clean.py b/conda/cli/main_clean.py
--- a/conda/cli/main_clean.py
+++ b/conda/cli/main_clean.py
@@ -8,6 +8,7 @@
from argparse import RawDescriptionHelpFormatter
import os
import sys
+from collections import defaultdict
from os.path import join, getsize, isdir
from os import lstat, walk... | conda clean -t fails with FileNotFoundError
```
[root@localhost conda-recipes]# conda clean -t
An unexpected error has occurred, please consider sending the
following traceback to the conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Include the output of the command 'conda info' in your report... | 2015-03-30T19:30:39 | ||
conda/conda | 1,318 | conda__conda-1318 | [
"1317"
] | d6704ec38705aa3181aabff5759d0365cd0e59b0 | diff --git a/conda/cli/main_remove.py b/conda/cli/main_remove.py
--- a/conda/cli/main_remove.py
+++ b/conda/cli/main_remove.py
@@ -190,6 +190,9 @@ def execute(args, parser):
return
+ if not args.json:
+ common.confirm_yn(args)
+
if args.json and not args.quiet:
with json_progress_ba... | conda remove --dry-run actually removes the package
Is there anything set around here:
https://github.com/conda/conda/blob/ded940c3fa845bbb86b3492e4a7c883c1bcec10b/conda/cli/main_remove.py#L196
to actually exit before removing the package if --dry-run is set but --json is not?
I'm just running 3.11.0 and haven't gra... | 2015-05-04T20:08:26 | ||
conda/conda | 1,463 | conda__conda-1463 | [
"1452"
] | 3ea1dc2f9a91b05509b80e6fd8d6ee08299967dd | diff --git a/conda/fetch.py b/conda/fetch.py
--- a/conda/fetch.py
+++ b/conda/fetch.py
@@ -185,6 +185,10 @@ def handle_proxy_407(url, session):
# We could also use HTTPProxyAuth, but this does not work with https
# proxies (see https://github.com/kennethreitz/requests/issues/2061).
scheme = requests.pack... | https proxy username/password
I have installed anaconda using the command "bash Anaconda-2.3.0-Linux-x86_64.sh" and gave path of bin/conda to .bashrc and default it asks for bin path prepending which I gave, after closing and then running terminal I ran:
conda create -n dato-env python=2.7
which requires https proxy un... | Can you paste the output of `conda info` here?
Sure. Output of conda info:
Current conda install:
```
platform : linux-64
conda version : 3.14.1
```
conda-build version : 1.14.1
python version : 2.7.10.final.0
requests version : 2.7.0
root environment : /home/mayank/anaconda (writabl... | 2015-07-27T18:35:38 | |
conda/conda | 1,496 | conda__conda-1496 | [
"1495"
] | 8d095e771947121c32edef476efc333e2cfeb60b | diff --git a/conda/connection.py b/conda/connection.py
--- a/conda/connection.py
+++ b/conda/connection.py
@@ -19,7 +19,7 @@
import conda
from conda.compat import urlparse, StringIO
-from conda.config import get_proxy_servers
+from conda.config import get_proxy_servers, ssl_verify
import requests
@@ -82,6 +82,... | Set the default CondaSession.verify default from the config setting
Currently, the .condarc config setting must be explicitly used when making a request with a CondaSession object. This means that anyone who wants to use CondaSession must check the .condarc ssl_verify value and appropriately interpret it, etc. (For e... | Sounds good to me.
| 2015-08-05T17:57:52 | |
conda/conda | 1,541 | conda__conda-1541 | [
"1535"
] | a003d2809ec13f826f0692c9515a2f1291fae56f | diff --git a/conda/install.py b/conda/install.py
--- a/conda/install.py
+++ b/conda/install.py
@@ -272,6 +272,7 @@ def update_prefix(path, new_prefix, placeholder=prefix_placeholder,
if new_data == data:
return
st = os.lstat(path)
+ os.remove(path) # Remove file before rewriting to avoid destroyin... | `conda.install.update_prefix` is modifying cached pkgs in Windows
Since files are hardlinks, it looks like conda's prefix replacement mechanism is breaking its own files.
File contents inside package:
``` python
x = r'/opt/anaconda1anaconda2anaconda3\Scripts',
```
File contents after installing in 'env1':
``` pytho... | 2015-08-20T12:16:12 | ||
conda/conda | 1,562 | conda__conda-1562 | [
"1561"
] | 113e9451512b87d0bf0ef3ecdd19ca78fb25c047 | diff --git a/conda/resolve.py b/conda/resolve.py
--- a/conda/resolve.py
+++ b/conda/resolve.py
@@ -309,7 +309,7 @@ def add_dependents(fn1, max_only=False):
if not found:
raise NoPackagesFound("Could not find some dependencies "
- "for %s: %s" % (ms, ', '.jo... | recursion problem or infinite loop in dependency solver
I am executing this command:
``` bash
/opt/wakari/miniconda/bin/conda update --dry-run -c https://conda.anaconda.org/wakari/channel/release:0.8.0 -p /opt/wakari/wakari-server --all
```
And it appears to loop "forever" (well, for a few minutes, at least", stating... | This is with conda 3.16.0:
``` bash
/opt/wakari/miniconda/bin/conda -V
conda 3.16.0
```
I see the problem. It's trying to ignore `wakari-server` but it really should be ignoring `wakari-enterprise-server-conf`.
| 2015-08-31T16:25:35 | |
conda/conda | 1,563 | conda__conda-1563 | [
"1557"
] | 9e9becd30eeb6e56c1601521f5edb7b16a29abd7 | diff --git a/conda/cli/install.py b/conda/cli/install.py
--- a/conda/cli/install.py
+++ b/conda/cli/install.py
@@ -169,6 +169,8 @@ def install(args, parser, command='install'):
if any(pkg.split('=')[0] == default_pkg for pkg in args.packages):
default_packages.remove(default_pkg)
... | create_default_packages rules out --clone
Hi all,
In case of the .condarc file defining the 'create_default_packages' options, the conda --clone command gives a confusing error messages:
alain@alain-K53E:~$ conda create --name flowersqq --clone snowflakes
Fetching package metadata: ....
Error: did not expect any argum... | 2015-08-31T19:55:34 | ||
conda/conda | 1,613 | conda__conda-1613 | [
"1118"
] | acf392df41d6c4ecf311733b38869d83fa19239f | diff --git a/conda/cli/install.py b/conda/cli/install.py
--- a/conda/cli/install.py
+++ b/conda/cli/install.py
@@ -196,12 +196,14 @@ def install(args, parser, command='install'):
common.check_specs(prefix, specs, json=args.json,
create=(command == 'create'))
- # handle tar file... | conda install --no-deps still installing deps when installing tarball
When running the following command:
`conda install --no-deps ./matplotlib-1.4.0-np18py27_0.tar.bz2`
You would assume that no dependencies are installed, but conda seems to install the dependencies anyway.
| fwiw: This seemed to work with conda 3.7.0
That's because conda used to never install the dependencies of a tarball. This feature was added, but the `--no-deps` flag was neglected.
@ilanschnell this is similar to the issue I was describing with `--offline` installations breaking because of the dependency resolution ... | 2015-09-14T17:37:43 | |
conda/conda | 1,618 | conda__conda-1618 | [
"1594"
] | 1b100cde07dac3769e1dbffcb05e11574b9a416b | diff --git a/conda/install.py b/conda/install.py
--- a/conda/install.py
+++ b/conda/install.py
@@ -27,19 +27,19 @@
from __future__ import print_function, division, absolute_import
-import time
-import os
-import json
import errno
+import json
+import logging
+import os
+import shlex
import shutil
import stat
-i... | `conda.install.rm_rf` can't delete old environments in Windows + Python 2.7
This issue hit me when trying to use `--force` option in `conda env create` (I added this in #102), and it revealed a possible problem with how conda handles links in Windows + Python 2.7.
# Symptom
Trying to delete an environment (not active)... | A possible solution would to force all conda requirements ( python, pycosat, pyyaml, conda, openssl, requests) to be copied in Windows (never linked).
This might also be enough to remove some code in `install.py` that already has a different behavior when linking python (just need to do the same for the other ones)
I... | 2015-09-15T18:13:42 | |
conda/conda | 1,668 | conda__conda-1668 | [
"1667"
] | c13df56c2a6b4e494bfffbb695df63d34e28ad5f | diff --git a/conda/cli/common.py b/conda/cli/common.py
--- a/conda/cli/common.py
+++ b/conda/cli/common.py
@@ -180,6 +180,16 @@ def add_parser_use_index_cache(p):
help="Use cache of channel index files.",
)
+
+def add_parser_no_use_index_cache(p):
+ p.add_argument(
+ "--no-use-index-cache",
+ ... | conda remove shouldn't fetch the package metadata
It only needs it to print the channel location. It should either get that locally, or at least just use the index cache.
| 2015-10-01T19:07:14 | ||
conda/conda | 1,735 | conda__conda-1735 | [
"1734"
] | 02c652c00ebad8c17747509185d007057d2b0374 | diff --git a/conda/utils.py b/conda/utils.py
--- a/conda/utils.py
+++ b/conda/utils.py
@@ -5,8 +5,10 @@
import hashlib
import collections
from functools import partial
-from os.path import abspath, isdir, join
+from os.path import abspath, isdir
import os
+import tempfile
+
log = logging.getLogger(__name__)
std... | Race condition for root environment detection
Periodically, when two conda processes are running at the same time, it is possible to see a race condition on determining whether the root environment is writable. Notice how the following produces two different configs from the same setup:
```
$ conda info & conda info
... | 2015-10-24T05:46:05 | ||
conda/conda | 1,807 | conda__conda-1807 | [
"1751"
] | f46c73c3cb6353a409449fdba08fdbd0856bdb35 | diff --git a/conda/cli/main_clean.py b/conda/cli/main_clean.py
--- a/conda/cli/main_clean.py
+++ b/conda/cli/main_clean.py
@@ -151,9 +151,13 @@ def rm_tarballs(args, pkgs_dirs, totalsize, verbose=True):
for pkgs_dir in pkgs_dirs:
for fn in pkgs_dirs[pkgs_dir]:
- if verbose:
- p... | diff --git a/tests/test_install.py b/tests/test_install.py
--- a/tests/test_install.py
+++ b/tests/test_install.py
@@ -8,7 +8,7 @@
from conda import install
-from conda.install import PaddingError, binary_replace, update_prefix
+from conda.install import PaddingError, binary_replace, update_prefix, warn_failed_rem... | conda clean -pt as non-root user with root anaconda install
I have installed root miniconda at /opt/anaconda. When running
```
conda clean -pt
```
as a lesser user than root, I am seeing errors indicating conda is not checking permissions before attempting to delete package dirs:
```
conda clean -pt
Cache location... | Hi @csoja - this issue is blocking some key Build System stability fixes. LMK if this can be prioritized (along with #1752 above)
@stephenakearns and @PeterDSteinberg and @csoja this issue is also now preventing us from moving forward with the anaconda-cluster build scripts.
@csoja - I know you're strapped for resour... | 2015-11-11T20:20:17 |
conda/conda | 1,808 | conda__conda-1808 | [
"1752"
] | f46c73c3cb6353a409449fdba08fdbd0856bdb35 | diff --git a/conda/cli/main_clean.py b/conda/cli/main_clean.py
--- a/conda/cli/main_clean.py
+++ b/conda/cli/main_clean.py
@@ -151,9 +151,13 @@ def rm_tarballs(args, pkgs_dirs, totalsize, verbose=True):
for pkgs_dir in pkgs_dirs:
for fn in pkgs_dirs[pkgs_dir]:
- if verbose:
- p... | diff --git a/tests/test_install.py b/tests/test_install.py
--- a/tests/test_install.py
+++ b/tests/test_install.py
@@ -8,7 +8,7 @@
from conda import install
-from conda.install import PaddingError, binary_replace, update_prefix
+from conda.install import PaddingError, binary_replace, update_prefix, warn_failed_rem... | conda clean -pt with empty package cache and non-root user
I have a root miniconda install at /opt/anaconda. I ran
```
conda clean -pt
```
successfully as root then immediately tried running the same command as a lesser user. I got this error even though the package cache was empty:
```
Cache location:
There ar... | Appears somewhat related to #1751. Fixing #1751 and #1752 is necessary for the future needs of anaconda-build.
| 2015-11-11T21:17:30 |
conda/conda | 1,944 | conda__conda-1944 | [
"1285"
] | 4db6b4e58c6efa70e461dd68a90d812d4a634619 | diff --git a/conda/cli/main_clean.py b/conda/cli/main_clean.py
--- a/conda/cli/main_clean.py
+++ b/conda/cli/main_clean.py
@@ -65,6 +65,95 @@ def configure_parser(sub_parsers):
p.set_defaults(func=execute)
+# work-around for python bug on Windows prior to python 3.2
+# https://bugs.python.org/issue10027
+# Ada... | conda clean -p breaks hard linking of new installs
@asmeurer
Following on from conda/conda#68:
On Windows 8 (and probably equally on all other windows versions), `conda clean -p` removes all extracted packaged from the `pkgs` directory even if they are hard linked in some environments.
While all existing environment... | Yep, pretty annoying issue.
> The problem lies in main_clean.py and the fact that on Windows lstat(file).st_nlink always returns 0, even if file is hard linked. (This seems to have been fixed from python 3.2 onwards: https://bugs.python.org/issue10027)
If it's really the case then WinAPI **GetFileInformationByHandle*... | 2016-01-08T15:05:30 | |
conda/conda | 2,108 | conda__conda-2108 | [
"2093"
] | d637298bb13b5434a989174ebe9acea3d7a0e2a0 | diff --git a/conda/connection.py b/conda/connection.py
--- a/conda/connection.py
+++ b/conda/connection.py
@@ -101,7 +101,9 @@ def send(self, request, stream=None, timeout=None, verify=None, cert=None,
import boto
except ImportError:
stderrlog.info('\nError: boto is required for S3 ch... | confusing error message when boto is missing
If one tries to install from an s3 channel (e.g., `conda install foo -c s3://bar/baz/conda`) while in an environment, this message shows up: `Error: boto is required for S3 channels. Please install it with: conda install boto`. Installing `boto` in the environment doesn't ... | 2016-02-19T22:10:29 |
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SWE-Fixer: Training Open-Source LLMs for Effective and Efficient GitHub Issue Resolution
SWE-Fixer is a simple yet effective solution for addressing real-world GitHub issues by training open-source LLMs. It features a streamlined retrieve-then-edit pipeline with two core components: a code file retriever and a code editor.
This repo holds the data SWE-Fixer-Train-110K we curated for SWE-Fixer training.
For more information, please visit our project page.
π Citation
@article{xie2025swefixer,
title={SWE-Fixer: Training Open-Source LLMs for Effective and Efficient GitHub Issue Resolution},
author={Xie, Chengxing and Li, Bowen and Gao, Chang and Du, He and Lam, Wai and Zou, Difan and Chen, Kai},
journal={arXiv preprint arXiv:2501.05040},
year={2025}
}
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